IL_8IPD_117

3D structure

PDB id

8IPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IPD_117 not in the Motif Atlas

Homologous match to IL_8C3A_092

Geometric discrepancy: 0.5507

The information below is about IL_8C3A_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58579.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

8IPD|1|2|G|3710
8IPD|1|2|A|3711
8IPD|1|2|A|3712
8IPD|1|2|U|3713
8IPD|1|2|G|3714
*
8IPD|1|2|C|3739
8IPD|1|2|G|3740
8IPD|1|2|C|3741

Current chains

Chain 2

28S rRNA

Nearby chains

Chain w

G Protein Nucleolar 2