IL_8IPD_134

3D structure

PDB id

8IPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAAGCG*CGACG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IPD|1|2|C|4412
8IPD|1|2|C|4413
8IPD|1|2|A|4414
8IPD|1|2|A|4415
8IPD|1|2|G|4416
8IPD|1|2|C|4417
8IPD|1|2|G|4418
*
8IPD|1|2|C|4426
8IPD|1|2|G|4427
8IPD|1|2|A|4428
8IPD|1|2|C|4429
8IPD|1|2|G|4430

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

GTP-binding protein 4

Chain J

Ribosome biogenesis protein NSA2 homolog

Chain W

Notchless protein homolog 1

Chain u

Guanine nucleotide-binding protein-like 3