IL_8IPD_154
3D structure
- PDB id
- 8IPD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CCUCGGAUAG*U(OMG)C(2MG)GAGUG
- Length
- 19 nucleotides
- Bulged bases
- 8IPD|1|2|A|4764, 8IPD|1|2|G|4873, 8IPD|1|2|A|4874, 8IPD|1|2|U|4876
- QA status
- Modified nucleotides: OMG, 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8IPD|1|2|C|4756
8IPD|1|2|C|4757
8IPD|1|2|U|4758
8IPD|1|2|C|4759
8IPD|1|2|G|4760
8IPD|1|2|G|4761
8IPD|1|2|A|4762
8IPD|1|2|U|4763
8IPD|1|2|A|4764
8IPD|1|2|G|4765
*
8IPD|1|2|U|4869
8IPD|1|2|OMG|4870
8IPD|1|2|C|4871
8IPD|1|2|2MG|4872
8IPD|1|2|G|4873
8IPD|1|2|A|4874
8IPD|1|2|G|4875
8IPD|1|2|U|4876
8IPD|1|2|G|4877
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain I
- 60S ribosomal protein L9
- Chain S
- 60S ribosomal protein L14
- Chain V
- 60S ribosomal protein L13a
- Chain b
- 60S ribosomal protein L18a
- Chain o
- 60S ribosomal protein L6
- Chain z
- Protein LLP homolog
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