IL_8IPD_175

3D structure

PDB id

8IPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IPD_175 not in the Motif Atlas

Geometric match to IL_8VTW_090

Geometric discrepancy: 0.3763

The information below is about IL_8VTW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

8IPD|1|2|C|1096
8IPD|1|2|C|1097
*
8IPD|1|2|G|1198
8IPD|1|2|G|1199
8IPD|1|2|G|1200

Current chains

Chain 2

28S rRNA

Nearby chains

Chain T

60S ribosomal protein L21

Chain b

60S ribosomal protein L18a