IL_8IPD_176

3D structure

PDB id

8IPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGGG*CGCCGUG

Length

12 nucleotides

Bulged bases

8IPD|1|2|G|1359, 8IPD|1|2|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IPD|1|2|C|1357
8IPD|1|2|G|1358
8IPD|1|2|G|1359
8IPD|1|2|G|1360
8IPD|1|2|G|1361
*
8IPD|1|2|C|1376
8IPD|1|2|G|1377
8IPD|1|2|C|1378
8IPD|1|2|C|1379
8IPD|1|2|G|1380
8IPD|1|2|U|1381
8IPD|1|2|G|1382

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain L

60S ribosomal protein L27a

Chain Q

60S ribosomal protein L13

Chain U

60S ribosomal protein L15