IL_8IPD_183

3D structure

PDB id

8IPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCGAUGG*CGUUGC

Length

13 nucleotides

Bulged bases

8IPD|1|2|G|2483, 8IPD|1|2|A|2484, 8IPD|1|2|G|2493, 8IPD|1|2|U|2494, 8IPD|1|2|U|2495

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IPD|1|2|G|2481
8IPD|1|2|C|2482
8IPD|1|2|G|2483
8IPD|1|2|A|2484
8IPD|1|2|U|2485
8IPD|1|2|G|2486
8IPD|1|2|G|2487
*
8IPD|1|2|C|2492
8IPD|1|2|G|2493
8IPD|1|2|U|2494
8IPD|1|2|U|2495
8IPD|1|2|G|2496
8IPD|1|2|C|2497

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain g

60S ribosomal protein L23a