IL_8IPD_185

3D structure

PDB id

8IPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUC*GAGCAGAAGGGCAAAAG

Length

20 nucleotides

Bulged bases

8IPD|1|2|A|4273, 8IPD|1|2|A|4274, 8IPD|1|2|A|4279, 8IPD|1|2|A|4280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IPD|1|2|C|4241
8IPD|1|2|U|4242
8IPD|1|2|C|4243
*
8IPD|1|2|G|4267
8IPD|1|2|A|4268
8IPD|1|2|G|4269
8IPD|1|2|C|4270
8IPD|1|2|A|4271
8IPD|1|2|G|4272
8IPD|1|2|A|4273
8IPD|1|2|A|4274
8IPD|1|2|G|4275
8IPD|1|2|G|4276
8IPD|1|2|G|4277
8IPD|1|2|C|4278
8IPD|1|2|A|4279
8IPD|1|2|A|4280
8IPD|1|2|A|4281
8IPD|1|2|A|4282
8IPD|1|2|G|4283

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain C

60S ribosomal protein L11

Chain R

60S ribosomal protein L5

Chain T

60S ribosomal protein L21