IL_8IPY_019

3D structure

PDB id

8IPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCGC*GUC

Length

7 nucleotides

Bulged bases

8IPY|1|2|C|449

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IPY_019 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.2316

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8IPY|1|2|G|448
8IPY|1|2|C|449
8IPY|1|2|G|450
8IPY|1|2|C|451
*
8IPY|1|2|G|1296
8IPY|1|2|U|1297
8IPY|1|2|C|1298

Current chains

Chain 2

28S rRNA

Nearby chains

Chain k

60S ribosomal protein L32

Chain n

60S ribosomal protein L35a

Chain o

60S ribosomal protein L6