IL_8IPY_027

3D structure

PDB id

8IPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCCCGG*UC

Length

8 nucleotides

Bulged bases

8IPY|1|2|C|501, 8IPY|1|2|C|502, 8IPY|1|2|C|503, 8IPY|1|2|G|504

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IPY_027 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.1932

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

8IPY|1|2|G|500
8IPY|1|2|C|501
8IPY|1|2|C|502
8IPY|1|2|C|503
8IPY|1|2|G|504
8IPY|1|2|G|505
*
8IPY|1|2|U|653
8IPY|1|2|C|654

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain Z

60S ribosomal protein L18