IL_8IPY_065

3D structure

PDB id

8IPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUCGCAGACCCGACGCCCGCCACG*CG

Length

26 nucleotides

Bulged bases

8IPY|1|2|A|1699, 8IPY|1|2|G|1700, 8IPY|1|2|C|1707, 8IPY|1|2|C|1714, 8IPY|1|2|C|1718

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IPY|1|2|C|1694
8IPY|1|2|U|1695
8IPY|1|2|C|1696
8IPY|1|2|G|1697
8IPY|1|2|C|1698
8IPY|1|2|A|1699
8IPY|1|2|G|1700
8IPY|1|2|A|1701
8IPY|1|2|C|1702
8IPY|1|2|C|1703
8IPY|1|2|C|1704
8IPY|1|2|G|1705
8IPY|1|2|A|1706
8IPY|1|2|C|1707
8IPY|1|2|G|1708
8IPY|1|2|C|1709
8IPY|1|2|C|1714
8IPY|1|2|C|1715
8IPY|1|2|G|1716
8IPY|1|2|C|1717
8IPY|1|2|C|1718
8IPY|1|2|A|1719
8IPY|1|2|C|1720
8IPY|1|2|G|1721
*
8IPY|1|2|C|1841
8IPY|1|2|G|1842

Current chains

Chain 2

28S rRNA

Nearby chains

Chain A

60S ribosomal protein L29

Chain D

60S ribosomal protein L4

Chain T

60S ribosomal protein L21

Chain Z

60S ribosomal protein L18

Chain p

60S ribosomal protein L7