IL_8IPY_090
3D structure
- PDB id
- 8IPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State D'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- G(7MG)G*CCC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IPY_090 not in the Motif Atlas
- Geometric match to IL_4E59_001
- Geometric discrepancy: 0.1197
- The information below is about IL_4E59_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_01003.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 213
Unit IDs
8IPY|1|2|G|2521
8IPY|1|2|7MG|2522
8IPY|1|2|G|2523
*
8IPY|1|2|C|2532
8IPY|1|2|C|2533
8IPY|1|2|C|2534
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain F
- 60S ribosomal protein L34
- Chain O
- 60S ribosomal protein L38
- Chain a
- 60S ribosomal protein L19
- Chain g
- 60S ribosomal protein L23a
- Chain q
- Pescadillo homolog
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