IL_8IPY_091
3D structure
- PDB id
- 8IPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State D'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAGUGG*C(OMG)C
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IPY_091 not in the Motif Atlas
- Geometric match to IL_6DME_003
- Geometric discrepancy: 0.3316
- The information below is about IL_6DME_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_75527.2
- Basepair signature
- cWW-cWW-cSH-cWW
- Number of instances in this motif group
- 10
Unit IDs
8IPY|1|2|G|2542
8IPY|1|2|A|2543
8IPY|1|2|G|2544
8IPY|1|2|U|2545
8IPY|1|2|G|2546
8IPY|1|2|G|2547
*
8IPY|1|2|C|2772
8IPY|1|2|OMG|2773
8IPY|1|2|C|2774
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain O
- 60S ribosomal protein L38
- Chain f
- Ribosome biogenesis protein NOP53
- Chain q
- Pescadillo homolog
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