IL_8IPY_093
3D structure
- PDB id
- 8IPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State D'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAUC*GG(B9B)AG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: B9B
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IPY_093 not in the Motif Atlas
- Homologous match to IL_8P9A_295
- Geometric discrepancy: 0.2053
- The information below is about IL_8P9A_295
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_15190.1
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 22
Unit IDs
8IPY|1|2|C|2589
8IPY|1|2|G|2590
8IPY|1|2|A|2591
8IPY|1|2|U|2592
8IPY|1|2|C|2593
*
8IPY|1|2|G|2752
8IPY|1|2|G|2753
8IPY|1|2|B9B|2754
8IPY|1|2|A|2755
8IPY|1|2|G|2756
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain F
- 60S ribosomal protein L34
- Chain f
- Ribosome biogenesis protein NOP53
- Chain i
- 60S ribosomal protein L27
- Chain m
- 60S ribosomal protein L8
- Chain q
- Pescadillo homolog
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