IL_8IPY_107

3D structure

PDB id

8IPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGUC*GGCGCCUAGC

Length

15 nucleotides

Bulged bases

8IPY|1|2|G|3592, 8IPY|1|2|C|3593, 8IPY|1|2|U|3595, 8IPY|1|2|A|3596

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IPY|1|2|G|2901
8IPY|1|2|G|2902
8IPY|1|2|G|2903
8IPY|1|2|U|2904
8IPY|1|2|C|2905
*
8IPY|1|2|G|3589
8IPY|1|2|G|3590
8IPY|1|2|C|3591
8IPY|1|2|G|3592
8IPY|1|2|C|3593
8IPY|1|2|C|3594
8IPY|1|2|U|3595
8IPY|1|2|A|3596
8IPY|1|2|G|3597
8IPY|1|2|C|3598

Current chains

Chain 2

28S rRNA

Nearby chains

Chain a

60S ribosomal protein L19

Chain f

Ribosome biogenesis protein NOP53