IL_8IPY_113

3D structure

PDB id

8IPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IPY_113 not in the Motif Atlas

Homologous match to IL_8C3A_091

Geometric discrepancy: 0.3589

The information below is about IL_8C3A_091

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

8IPY|1|2|C|3708
8IPY|1|2|U|3709
8IPY|1|2|G|3710
*
8IPY|1|2|C|3741
8IPY|1|2|G|3742

Current chains

Chain 2

28S rRNA

Nearby chains

Chain N

Protein SDA1 homolog

Chain m

60S ribosomal protein L8