IL_8IPY_117

3D structure

PDB id

8IPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAG*UCUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IPY_117 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2324

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8IPY|1|2|G|3754
8IPY|1|2|G|3755
8IPY|1|2|A|3756
8IPY|1|2|G|3757
*
8IPY|1|2|U|3768
8IPY|1|2|C|3769
8IPY|1|2|U|3770
8IPY|1|2|C|3771

Current chains

Chain 2

28S rRNA

Nearby chains

Chain N

Protein SDA1 homolog

Chain w

G Protein Nucleolar 2