IL_8IPY_120

3D structure

PDB id

8IPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

8IPY|1|2|C|4560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IPY_120 not in the Motif Atlas

Geometric match to IL_7A0S_085

Geometric discrepancy: 0.3147

The information below is about IL_7A0S_085

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.7

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

40

Unit IDs

8IPY|1|2|G|3900
8IPY|1|2|A|3901
*
8IPY|1|2|U|4558
8IPY|1|2|A|4559
8IPY|1|2|C|4560
8IPY|1|2|C|4561

Current chains

Chain 2

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3