IL_8IPY_122
3D structure
- PDB id
- 8IPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State D'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GA*UACC
- Length
- 6 nucleotides
- Bulged bases
- 8IPY|1|2|A|4385
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IPY_122 not in the Motif Atlas
- Homologous match to IL_8C3A_099
- Geometric discrepancy: 0.0909
- The information below is about IL_8C3A_099
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_18604.1
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 46
Unit IDs
8IPY|1|2|G|3916
8IPY|1|2|A|3917
*
8IPY|1|2|U|4384
8IPY|1|2|A|4385
8IPY|1|2|C|4386
8IPY|1|2|C|4387
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 4
- GTP-binding protein 4
- Chain J
- Ribosome biogenesis protein NSA2 homolog
- Chain m
- 60S ribosomal protein L8
- Chain w
- G Protein Nucleolar 2
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