IL_8IPY_152

3D structure

PDB id

8IPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUCGGAUAG*U(OMG)C(2MG)GAGUG

Length

19 nucleotides

Bulged bases

8IPY|1|2|C|4757, 8IPY|1|2|U|4758, 8IPY|1|2|A|4764, 8IPY|1|2|G|4873, 8IPY|1|2|A|4874, 8IPY|1|2|U|4876

QA status

Modified nucleotides: OMG, 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IPY|1|2|C|4756
8IPY|1|2|C|4757
8IPY|1|2|U|4758
8IPY|1|2|C|4759
8IPY|1|2|G|4760
8IPY|1|2|G|4761
8IPY|1|2|A|4762
8IPY|1|2|U|4763
8IPY|1|2|A|4764
8IPY|1|2|G|4765
*
8IPY|1|2|U|4869
8IPY|1|2|OMG|4870
8IPY|1|2|C|4871
8IPY|1|2|2MG|4872
8IPY|1|2|G|4873
8IPY|1|2|A|4874
8IPY|1|2|G|4875
8IPY|1|2|U|4876
8IPY|1|2|G|4877

Current chains

Chain 2

28S rRNA

Nearby chains

Chain I

60S ribosomal protein L9

Chain S

60S ribosomal protein L14

Chain V

60S ribosomal protein L13a

Chain b

60S ribosomal protein L18a

Chain o

60S ribosomal protein L6