IL_8IPY_181
3D structure
- PDB id
- 8IPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State D'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGAAGUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- 8IPY|1|2|G|3839
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IPY_181 not in the Motif Atlas
- Homologous match to IL_8C3A_484
- Geometric discrepancy: 0.1501
- The information below is about IL_8C3A_484
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.2
- Basepair signature
- cWW-cWW-L-cWW-L-R-L-R-L-L
- Number of instances in this motif group
- 3
Unit IDs
8IPY|1|2|G|2847
8IPY|1|2|G|2848
8IPY|1|2|A|2849
8IPY|1|2|A|2850
8IPY|1|2|G|2851
8IPY|1|2|U|2852
8IPY|1|2|C|2853
8IPY|1|2|G|2854
8IPY|1|2|G|2855
*
8IPY|1|2|C|3837
8IPY|1|2|U|3838
8IPY|1|2|G|3839
8IPY|1|2|U|3840
8IPY|1|2|C|3841
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 9
- Zinc finger protein 593
- Chain B
- 60S ribosomal protein L3
- Chain e
- 60S ribosomal protein L23
- Chain w
- G Protein Nucleolar 2
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