IL_8IPY_182

3D structure

PDB id

8IPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUC*GAGCAGAAGGGCAAAAG

Length

20 nucleotides

Bulged bases

8IPY|1|2|A|4271, 8IPY|1|2|G|4272, 8IPY|1|2|A|4273, 8IPY|1|2|A|4274, 8IPY|1|2|A|4280, 8IPY|1|2|A|4282

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IPY|1|2|C|4241
8IPY|1|2|U|4242
8IPY|1|2|C|4243
*
8IPY|1|2|G|4267
8IPY|1|2|A|4268
8IPY|1|2|G|4269
8IPY|1|2|C|4270
8IPY|1|2|A|4271
8IPY|1|2|G|4272
8IPY|1|2|A|4273
8IPY|1|2|A|4274
8IPY|1|2|G|4275
8IPY|1|2|G|4276
8IPY|1|2|G|4277
8IPY|1|2|C|4278
8IPY|1|2|A|4279
8IPY|1|2|A|4280
8IPY|1|2|A|4281
8IPY|1|2|A|4282
8IPY|1|2|G|4283

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain C

60S ribosomal protein L11

Chain N

Protein SDA1 homolog

Chain R

60S ribosomal protein L5

Chain T

60S ribosomal protein L21