IL_8IR1_007

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAU*ACAUGUG

Length

12 nucleotides

Bulged bases

8IR1|1|2|G|119, 8IR1|1|2|U|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IR1|1|2|C|118
8IR1|1|2|G|119
8IR1|1|2|A|120
8IR1|1|2|A|121
8IR1|1|2|U|122
*
8IR1|1|2|A|147
8IR1|1|2|C|148
8IR1|1|2|A|149
8IR1|1|2|U|150
8IR1|1|2|G|151
8IR1|1|2|U|152
8IR1|1|2|G|153

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain G

60S ribosomal protein L7a

Chain H

60S ribosomal protein L35

Chain U

60S ribosomal protein L15