3D structure

PDB id
8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CCG*CGG
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary: CCG,CGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8IR1_010 not in the Motif Atlas
Geometric match to IL_4M4O_001
Geometric discrepancy: 0.2047
The information below is about IL_4M4O_001
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

8IR1|1|2|C|174
8IR1|1|2|C|175
8IR1|1|2|G|176
*
8IR1|1|2|C|260
8IR1|1|2|G|261
8IR1|1|2|G|262

Current chains

Chain 2
28S rRNA

Nearby chains

Chain H
60S ribosomal protein L35
Chain Q
60S ribosomal protein L13

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.7419 s