IL_8IR1_011

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCGCUCGUGG*CGGCG

Length

15 nucleotides

Bulged bases

8IR1|1|2|G|188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IR1|1|2|C|180
8IR1|1|2|C|181
8IR1|1|2|G|182
8IR1|1|2|C|183
8IR1|1|2|U|184
8IR1|1|2|C|185
8IR1|1|2|G|186
8IR1|1|2|U|187
8IR1|1|2|G|188
8IR1|1|2|G|189
*
8IR1|1|2|C|252
8IR1|1|2|G|253
8IR1|1|2|G|254
8IR1|1|2|C|255
8IR1|1|2|G|256

Current chains

Chain 2

28S rRNA

Nearby chains

Chain H

60S ribosomal protein L35

Chain M

60S ribosomal protein L37

Chain Q

60S ribosomal protein L13