3D structure

PDB id
8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GAAC*GAGUUCAAGAGGGC
Length
18 nucleotides
Bulged bases
8IR1|1|2|G|409
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8IR1_016 not in the Motif Atlas
Homologous match to IL_8C3A_015
Geometric discrepancy: 0.4864
The information below is about IL_8C3A_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_60992.7
Basepair signature
cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
Number of instances in this motif group
6

Unit IDs

8IR1|1|2|G|387
8IR1|1|2|A|388
8IR1|1|2|A|389
8IR1|1|2|C|390
*
8IR1|1|2|G|401
8IR1|1|2|A|402
8IR1|1|2|G|403
8IR1|1|2|U|404
8IR1|1|2|U|405
8IR1|1|2|C|406
8IR1|1|2|A|407
8IR1|1|2|A|408
8IR1|1|2|G|409
8IR1|1|2|A|410
8IR1|1|2|G|411
8IR1|1|2|G|412
8IR1|1|2|G|413
8IR1|1|2|C|414

Current chains

Chain 2
28S rRNA

Nearby chains

Chain 4
GTP-binding protein 4
Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain P
60S ribosomal protein L39
Chain Y
60S ribosomal protein L17
Chain h
60S ribosomal protein L26

Coloring options:


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