IL_8IR1_017
3D structure
- PDB id
- 8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUGAAAC*G(OMU)GGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IR1_017 not in the Motif Atlas
- Homologous match to IL_8C3A_016
- Geometric discrepancy: 0.1166
- The information below is about IL_8C3A_016
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8IR1|1|2|G|415
8IR1|1|2|U|416
8IR1|1|2|G|417
8IR1|1|2|A|418
8IR1|1|2|A|419
8IR1|1|2|A|420
8IR1|1|2|C|421
*
8IR1|1|8|G|13
8IR1|1|8|OMU|14
8IR1|1|8|G|15
8IR1|1|8|G|16
8IR1|1|8|A|17
8IR1|1|8|U|18
8IR1|1|8|C|19
Current chains
- Chain 2
- 28S rRNA
- Chain 8
- 5.8S rRMA
Nearby chains
- Chain 4
- GTP-binding protein 4
- Chain D
- 60S ribosomal protein L4
- Chain Y
- 60S ribosomal protein L17
- Chain k
- 60S ribosomal protein L32
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