IL_8IR1_030
3D structure
- PDB id
- 8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CG*CGG
- Length
- 5 nucleotides
- Bulged bases
- 8IR1|1|2|G|1287
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IR1_030 not in the Motif Atlas
- Geometric match to IL_4LFB_036
- Geometric discrepancy: 0.2413
- The information below is about IL_4LFB_036
- Detailed Annotation
- Single bulged G
- Broad Annotation
- No text annotation
- Motif group
- IL_28408.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 60
Unit IDs
8IR1|1|2|C|709
8IR1|1|2|G|710
*
8IR1|1|2|C|1286
8IR1|1|2|G|1287
8IR1|1|2|G|1288
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain n
- 60S ribosomal protein L35a
- Chain o
- 60S ribosomal protein L6
Coloring options: