IL_8IR1_037

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCU*AGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IR1_037 not in the Motif Atlas

Geometric match to IL_5UNE_001

Geometric discrepancy: 0.1722

The information below is about IL_5UNE_001

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_44465.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

9

Unit IDs

8IR1|1|2|G|752
8IR1|1|2|C|753
8IR1|1|2|U|754
*
8IR1|1|2|A|909
8IR1|1|2|G|910
8IR1|1|2|U|911

Current chains

Chain 2

28S rRNA

Nearby chains

Chain b

60S ribosomal protein L18a

Chain r

Coiled-coil domain-containing protein 86