3D structure

PDB id
8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CGAG*CGAG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8IR1_053 not in the Motif Atlas
Geometric match to IL_3D0U_002
Geometric discrepancy: 0.1518
The information below is about IL_3D0U_002
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_58355.1
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
44

Unit IDs

8IR1|1|2|C|1431
8IR1|1|2|G|1432
8IR1|1|2|A|1433
8IR1|1|2|G|1434
*
8IR1|1|2|C|1450
8IR1|1|2|G|1451
8IR1|1|2|A|1452
8IR1|1|2|G|1453

Current chains

Chain 2
28S rRNA

Nearby chains

Chain Z
60S ribosomal protein L18

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2529 s