IL_8IR1_057

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC(OMG)A(A2M)AG*CUAGUAGCUG

Length

17 nucleotides

Bulged bases

8IR1|1|2|A|1650, 8IR1|1|2|G|1654

QA status

Modified nucleotides: OMG, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IR1|1|2|C|1520
8IR1|1|2|C|1521
8IR1|1|2|OMG|1522
8IR1|1|2|A|1523
8IR1|1|2|A2M|1524
8IR1|1|2|A|1525
8IR1|1|2|G|1526
*
8IR1|1|2|C|1648
8IR1|1|2|U|1649
8IR1|1|2|A|1650
8IR1|1|2|G|1651
8IR1|1|2|U|1652
8IR1|1|2|A|1653
8IR1|1|2|G|1654
8IR1|1|2|C|1655
8IR1|1|2|U|1656
8IR1|1|2|G|1657

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain M

60S ribosomal protein L37

Chain Q

60S ribosomal protein L13