IL_8IR1_070

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUU*GAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IR1_070 not in the Motif Atlas

Geometric match to IL_4J50_001

Geometric discrepancy: 0.2941

The information below is about IL_4J50_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_10892.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

39

Unit IDs

8IR1|1|2|U|1860
8IR1|1|2|U|1861
8IR1|1|2|U|1862
*
8IR1|1|2|G|1872
8IR1|1|2|A|1873
8IR1|1|2|A|1874

Current chains

Chain 2

28S rRNA

Nearby chains

Chain c

60S ribosomal protein L21

Chain u

Guanine nucleotide-binding protein-like 3

Chain w

G Protein Nucleolar 2