IL_8IR1_071

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUG*C(A2M)G

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IR1_071 not in the Motif Atlas

Geometric match to IL_4WF9_083

Geometric discrepancy: 0.1766

The information below is about IL_4WF9_083

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

8IR1|1|2|U|1862
8IR1|1|2|U|1863
8IR1|1|2|G|1864
*
8IR1|1|2|C|1870
8IR1|1|2|A2M|1871
8IR1|1|2|G|1872

Current chains

Chain 2

28S rRNA

Nearby chains

Chain J

Ribosome biogenesis protein NSA2 homolog

Chain u

Guanine nucleotide-binding protein-like 3

Chain w

G Protein Nucleolar 2