3D structure

PDB id
8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GACCCAGAAAA*UGAAAAUGGAUG(OMG)CGC
Length
27 nucleotides
Bulged bases
8IR1|1|2|C|1935, 8IR1|1|2|G|2049
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8IR1|1|2|G|1933
8IR1|1|2|A|1934
8IR1|1|2|C|1935
8IR1|1|2|C|1937
8IR1|1|2|C|1938
8IR1|1|2|A|1939
8IR1|1|2|G|1940
8IR1|1|2|A|1941
8IR1|1|2|A|1942
8IR1|1|2|A|1943
8IR1|1|2|A|1944
*
8IR1|1|2|U|2038
8IR1|1|2|G|2039
8IR1|1|2|A|2040
8IR1|1|2|A|2041
8IR1|1|2|A|2042
8IR1|1|2|A|2043
8IR1|1|2|U|2044
8IR1|1|2|G|2045
8IR1|1|2|G|2046
8IR1|1|2|A|2047
8IR1|1|2|U|2048
8IR1|1|2|G|2049
8IR1|1|2|OMG|2050
8IR1|1|2|C|2051
8IR1|1|2|G|2052
8IR1|1|2|C|2053

Current chains

Chain 2
28S rRNA

Nearby chains

Chain 4
GTP-binding protein 4
Chain B
60S ribosomal protein L3
Chain J
Ribosome biogenesis protein NSA2 homolog
Chain V
60S ribosomal protein L13a
Chain b
60S ribosomal protein L18a
Chain n
60S ribosomal protein L35a
Chain u
Guanine nucleotide-binding protein-like 3

Coloring options:

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