3D structure

PDB id
8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GUGGC*GAAUC
Length
10 nucleotides
Bulged bases
8IR1|1|2|G|1975
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8IR1_081 not in the Motif Atlas
Homologous match to IL_8C3A_058
Geometric discrepancy: 0.4923
The information below is about IL_8C3A_058
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_30542.5
Basepair signature
cWW-L-R-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

8IR1|1|2|G|1973
8IR1|1|2|U|1974
8IR1|1|2|G|1975
8IR1|1|2|G|1976
8IR1|1|2|C|1977
*
8IR1|1|2|G|1989
8IR1|1|2|A|1990
8IR1|1|2|A|1991
8IR1|1|2|U|1992
8IR1|1|2|C|1993

Current chains

Chain 2
28S rRNA

Nearby chains

Chain J
Ribosome biogenesis protein NSA2 homolog
Chain N
Notchless protein homolog 1
Chain w
G Protein Nucleolar 2
Chain y
60S ribosomal protein L12

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1827 s