IL_8IR1_088

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

8IR1|1|2|A|2313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IR1_088 not in the Motif Atlas

Geometric match to IL_5WWT_001

Geometric discrepancy: 0.2025

The information below is about IL_5WWT_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

8IR1|1|2|U|2312
8IR1|1|2|A|2313
8IR1|1|2|G|2314
*
8IR1|1|2|C|2325
8IR1|1|2|G|2326

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain k

60S ribosomal protein L32