3D structure

PDB id
8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
AGAUGG*CGUUCCGAACGAU
Length
19 nucleotides
Bulged bases
8IR1|1|2|C|2470, 8IR1|1|2|A|2472, 8IR1|1|2|C|2505
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8IR1|1|2|A|2451
8IR1|1|2|G|2452
8IR1|1|2|A|2453
8IR1|1|2|U|2454
8IR1|1|2|G|2455
8IR1|1|2|G|2456
*
8IR1|1|2|C|2465
8IR1|1|2|G|2466
8IR1|1|2|U|2467
8IR1|1|2|U|2468
8IR1|1|2|C|2469
8IR1|1|2|C|2470
8IR1|1|2|G|2471
8IR1|1|2|A|2472
8IR1|1|2|A|2473
8IR1|1|2|C|2505
8IR1|1|2|G|2506
8IR1|1|2|A|2507
8IR1|1|2|U|2508

Current chains

Chain 2
28S rRNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain G
60S ribosomal protein L7a
Chain M
60S ribosomal protein L37
Chain U
60S ribosomal protein L15
Chain g
60S ribosomal protein L23a
Chain m
60S ribosomal protein L8

Coloring options:

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