IL_8IR1_093

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

G(7MG)G*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IR1_093 not in the Motif Atlas

Geometric match to IL_6OL3_002

Geometric discrepancy: 0.1185

The information below is about IL_6OL3_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8IR1|1|2|G|2521
8IR1|1|2|7MG|2522
8IR1|1|2|G|2523
*
8IR1|1|2|C|2532
8IR1|1|2|C|2533
8IR1|1|2|C|2534

Current chains

Chain 2

28S rRNA

Nearby chains

Chain F

60S ribosomal protein L34

Chain O

60S ribosomal protein L38

Chain a

60S ribosomal protein L19

Chain g

60S ribosomal protein L23a