3D structure

PDB id
8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
G(7MG)G*CCC
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8IR1_093 not in the Motif Atlas
Geometric match to IL_6OL3_002
Geometric discrepancy: 0.1185
The information below is about IL_6OL3_002
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

8IR1|1|2|G|2521
8IR1|1|2|7MG|2522
8IR1|1|2|G|2523
*
8IR1|1|2|C|2532
8IR1|1|2|C|2533
8IR1|1|2|C|2534

Current chains

Chain 2
28S rRNA

Nearby chains

Chain F
60S ribosomal protein L34
Chain O
60S ribosomal protein L38
Chain a
60S ribosomal protein L19
Chain g
60S ribosomal protein L23a

Coloring options:


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