3D structure

PDB id
8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CGAUC*GG(B9B)AG
Length
10 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: B9B

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8IR1_098 not in the Motif Atlas
Homologous match to IL_8P9A_295
Geometric discrepancy: 0.2132
The information below is about IL_8P9A_295
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_15190.1
Basepair signature
cWW-tSH-tHS-tHS-cWW
Number of instances in this motif group
22

Unit IDs

8IR1|1|2|C|2589
8IR1|1|2|G|2590
8IR1|1|2|A|2591
8IR1|1|2|U|2592
8IR1|1|2|C|2593
*
8IR1|1|2|G|2752
8IR1|1|2|G|2753
8IR1|1|2|B9B|2754
8IR1|1|2|A|2755
8IR1|1|2|G|2756

Current chains

Chain 2
28S rRNA

Nearby chains

Chain F
60S ribosomal protein L34
Chain i
60S ribosomal protein L27
Chain m
60S ribosomal protein L8

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0755 s