IL_8IR1_113

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAG*UCUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IR1_113 not in the Motif Atlas

Geometric match to IL_3CUL_002

Geometric discrepancy: 0.2766

The information below is about IL_3CUL_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

8IR1|1|2|G|3754
8IR1|1|2|G|3755
8IR1|1|2|A|3756
8IR1|1|2|G|3757
*
8IR1|1|2|U|3768
8IR1|1|2|C|3769
8IR1|1|2|U|3770
8IR1|1|2|C|3771

Current chains

Chain 2

28S rRNA

Nearby chains

Chain T

Ribosome production factor 2 homolog

Chain w

G Protein Nucleolar 2