IL_8IR1_114

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUC*GAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AUC,GAU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IR1_114 not in the Motif Atlas

Geometric match to IL_5TBW_047

Geometric discrepancy: 0.1671

The information below is about IL_5TBW_047

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

8IR1|1|2|A|3891
8IR1|1|2|U|3892
8IR1|1|2|C|3893
*
8IR1|1|2|G|4567
8IR1|1|2|A|4568
8IR1|1|2|U|4569

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain B

60S ribosomal protein L3

Chain Y

60S ribosomal protein L17