IL_8IR1_117
3D structure
- PDB id
- 8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUU*AC
- Length
- 5 nucleotides
- Bulged bases
- 8IR1|1|2|U|3914
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IR1_117 not in the Motif Atlas
- Homologous match to IL_8C3A_098
- Geometric discrepancy: 0.2412
- The information below is about IL_8C3A_098
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
8IR1|1|2|G|3913
8IR1|1|2|U|3914
8IR1|1|2|U|3915
*
8IR1|1|2|A|4388
8IR1|1|2|C|4389
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 4
- GTP-binding protein 4
- Chain D
- 60S ribosomal protein L4
- Chain w
- G Protein Nucleolar 2
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