IL_8IR1_119

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCUAG*UGGG(B8W)A

Length

11 nucleotides

Bulged bases

8IR1|1|2|G|4183

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IR1_119 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.3748

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8IR1|1|2|U|3925
8IR1|1|2|C|3926
8IR1|1|2|U|3927
8IR1|1|2|A|3928
8IR1|1|2|G|3929
*
8IR1|1|2|U|4181
8IR1|1|2|G|4182
8IR1|1|2|G|4183
8IR1|1|2|G|4184
8IR1|1|2|B8W|4185
8IR1|1|2|A|4186

Current chains

Chain 2

28S rRNA

Nearby chains

Chain U

60S ribosomal protein L15

Chain w

G Protein Nucleolar 2