IL_8IR1_120
3D structure
- PDB id
- 8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUG*CAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: CUG,CAG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IR1_120 not in the Motif Atlas
- Geometric match to IL_7A0S_031
- Geometric discrepancy: 0.1859
- The information below is about IL_7A0S_031
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 174
Unit IDs
8IR1|1|2|C|3931
8IR1|1|2|U|3932
8IR1|1|2|G|3933
*
8IR1|1|2|C|4177
8IR1|1|2|A|4178
8IR1|1|2|G|4179
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain U
- 60S ribosomal protein L15
Coloring options: