3D structure

PDB id
8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CUG*CAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary: CUG,CAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8IR1_120 not in the Motif Atlas
Geometric match to IL_7A0S_031
Geometric discrepancy: 0.1859
The information below is about IL_7A0S_031
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_01003.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
174

Unit IDs

8IR1|1|2|C|3931
8IR1|1|2|U|3932
8IR1|1|2|G|3933
*
8IR1|1|2|C|4177
8IR1|1|2|A|4178
8IR1|1|2|G|4179

Current chains

Chain 2
28S rRNA

Nearby chains

Chain U
60S ribosomal protein L15

Coloring options:


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