IL_8IR1_123

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUG,CAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IR1_123 not in the Motif Atlas

Geometric match to IL_5TBW_047

Geometric discrepancy: 0.2066

The information below is about IL_5TBW_047

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

8IR1|1|2|C|4207
8IR1|1|2|U|4208
8IR1|1|2|G|4209
*
8IR1|1|2|C|4223
8IR1|1|2|A|4224
8IR1|1|2|G|4225

Current chains

Chain 2

28S rRNA

Nearby chains

Chain A

60S ribosomal protein L11

Chain R

Ribosome biogenesis regulatory protein homolog

Chain c

60S ribosomal protein L21