IL_8IR1_124

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUGA*UACA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IR1_124 not in the Motif Atlas

Homologous match to IL_8GLP_310

Geometric discrepancy: 0.5734

The information below is about IL_8GLP_310

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

42

Unit IDs

8IR1|1|2|U|4295
8IR1|1|2|U|4296
8IR1|1|2|G|4297
8IR1|1|2|A|4298
*
8IR1|1|2|U|4312
8IR1|1|2|A|4313
8IR1|1|2|C|4314
8IR1|1|2|A|4315

Current chains

Chain 2

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L5

Chain J

Ribosome biogenesis protein NSA2 homolog

Chain R

Ribosome biogenesis regulatory protein homolog

Chain T

Ribosome production factor 2 homolog

Chain w

G Protein Nucleolar 2