IL_8IR1_128

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUCU*AACGUG(A2M)G

Length

12 nucleotides

Bulged bases

8IR1|1|2|A|4518, 8IR1|1|2|C|4519, 8IR1|1|2|G|4522

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IR1|1|2|C|4456
8IR1|1|2|U|4457
8IR1|1|2|C|4458
8IR1|1|2|U|4459
*
8IR1|1|2|A|4517
8IR1|1|2|A|4518
8IR1|1|2|C|4519
8IR1|1|2|G|4520
8IR1|1|2|U|4521
8IR1|1|2|G|4522
8IR1|1|2|A2M|4523
8IR1|1|2|G|4524

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

GTP-binding protein 4

Chain B

60S ribosomal protein L3

Chain V

60S ribosomal protein L13a

Chain e

60S ribosomal protein L23