IL_8IR1_133

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACC*G(7MG)U

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IR1_133 not in the Motif Atlas

Homologous match to IL_8C3A_121

Geometric discrepancy: 0.3248

The information below is about IL_8C3A_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

8IR1|1|2|A|4535
8IR1|1|2|C|4536
8IR1|1|2|C|4537
*
8IR1|1|2|G|4549
8IR1|1|2|7MG|4550
8IR1|1|2|U|4551

Current chains

Chain 2

28S rRNA

Nearby chains

Chain J

Ribosome biogenesis protein NSA2 homolog

Chain w

G Protein Nucleolar 2