IL_8IR1_141

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IR1_141 not in the Motif Atlas

Geometric match to IL_3R1C_012

Geometric discrepancy: 0.1407

The information below is about IL_3R1C_012

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

39

Unit IDs

8IR1|1|2|U|4638
8IR1|1|2|G|4639
8IR1|1|2|C|4640
*
8IR1|1|2|G|4659
8IR1|1|2|G|4660
8IR1|1|2|G|4661

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 7

Probable ribosome biogenesis protein RLP24

Chain j

60S ribosomal protein L31