IL_8IR1_142
3D structure
- PDB id
- 8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UU*AAUG
- Length
- 6 nucleotides
- Bulged bases
- 8IR1|1|2|A|4656, 8IR1|1|2|U|4657
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IR1_142 not in the Motif Atlas
- Homologous match to IL_5TBW_119
- Geometric discrepancy: 0.272
- The information below is about IL_5TBW_119
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_24807.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
8IR1|1|2|U|4641
8IR1|1|2|U|4642
*
8IR1|1|2|A|4655
8IR1|1|2|A|4656
8IR1|1|2|U|4657
8IR1|1|2|G|4658
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain a
- 60S ribosomal protein L19
- Chain j
- 60S ribosomal protein L31
Coloring options: