IL_8IR1_143
3D structure
- PDB id
- 8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GAUUAU*AGAAUC
- Length
- 12 nucleotides
- Bulged bases
- 8IR1|1|2|A|4708
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IR1_143 not in the Motif Atlas
- Geometric match to IL_7RQB_107
- Geometric discrepancy: 0.1597
- The information below is about IL_7RQB_107
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.5
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8IR1|1|2|G|4680
8IR1|1|2|A|4681
8IR1|1|2|U|4682
8IR1|1|2|U|4683
8IR1|1|2|A|4684
8IR1|1|2|U|4685
*
8IR1|1|2|A|4705
8IR1|1|2|G|4706
8IR1|1|2|A|4707
8IR1|1|2|A|4708
8IR1|1|2|U|4709
8IR1|1|2|C|4710
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain I
- 60S ribosomal protein L9
- Chain J
- Ribosome biogenesis protein NSA2 homolog
- Chain V
- 60S ribosomal protein L13a
- Chain u
- Guanine nucleotide-binding protein-like 3
- Chain z
- Protein LLP homolog
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