3D structure

PDB id
8IR1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GAUUAU*AGAAUC
Length
12 nucleotides
Bulged bases
8IR1|1|2|A|4708
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8IR1_143 not in the Motif Atlas
Geometric match to IL_7RQB_107
Geometric discrepancy: 0.1597
The information below is about IL_7RQB_107
Detailed Annotation
UAA/GAN with extra cWW
Broad Annotation
No text annotation
Motif group
IL_49767.5
Basepair signature
cWW-cWW-tWH-L-tHS-cWW
Number of instances in this motif group
5

Unit IDs

8IR1|1|2|G|4680
8IR1|1|2|A|4681
8IR1|1|2|U|4682
8IR1|1|2|U|4683
8IR1|1|2|A|4684
8IR1|1|2|U|4685
*
8IR1|1|2|A|4705
8IR1|1|2|G|4706
8IR1|1|2|A|4707
8IR1|1|2|A|4708
8IR1|1|2|U|4709
8IR1|1|2|C|4710

Current chains

Chain 2
28S rRNA

Nearby chains

Chain I
60S ribosomal protein L9
Chain J
Ribosome biogenesis protein NSA2 homolog
Chain V
60S ribosomal protein L13a
Chain u
Guanine nucleotide-binding protein-like 3
Chain z
Protein LLP homolog

Coloring options:


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